PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52106.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 539aa    MW: 58592.6 Da    PI: 5.8214
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52106.10genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.6e-06303325225
                    -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                    k ++C +far G C  Gd C++ H
  MLOC_52106.10 303 KSKPCTHFAR-GSCLKGDECPYDH 325
                    6789******.************* PP

2zf-CCCH22.32.2e-07331352526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f ++G C +Gd+CkF+H+
  MLOC_52106.10 331 PCHNFVENGMCFRGDKCKFSHV 352
                    7********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.455272299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5273297IPR000571Zinc finger, CCCH-type
SMARTSM003560.093273298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4300326IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122301328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5303326IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037329353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5330354IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4331352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864331354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4331351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MAGVQRAEGV KDMVVGGNVC RETVALVEEL MAEDVLRSMK DCLEGEVDEL VEPDVVVVND  60
DDHLLLDTMM TNFSGLIADA SGGTTSMLNM AEGVKELGAG TEEDRPVGDS DQHSVDGGVV  120
EEGEIEGDMQ ALDVDESDDS ELEVAGDEEL EEDFANRVLE ENESSGQGVR CLNLLSTPKI  180
KGTSDLVLNK EGSIKDDALK HVTRAQAVSY DEIVEWNETP LHDAEAPKQG KRKRLLTEER  240
KAKKTKNKRV KRAQQRIADG VKKLKLAPVI KPKPVKFCHF YMHGKCQLGN ACKFSHDTTP  300
LTKSKPCTHF ARGSCLKGDE CPYDHELSKY PCHNFVENGM CFRGDKCKFS HVVPTADCPS  360
KPDAKKSNAS VSEKPGREQI SSQKASTVHD GEHVTSAPTK HHSILKNLAT ISVNAQKTST  420
GIPKGVQFRP LCKDRSNSSM LLQDALPTEK HMYTNGSKHQ NFGGPQAAEG DKNANPNKQI  480
SAPLFDENSS KEASSHRSSD PKRTSLPIGS TTVVGSLSNQ HGVSEASRIL QEFLFGAGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658510.0AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569232.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010231934.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010231935.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLF2DPN30.0F2DPN3_HORVD; Predicted protein
STRINGMLOC_52106.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.28e-08C3H family protein